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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915696.1_cds_XP_016465458.1_58410
CDS Infomation

[gene=LOC107788296] [db_xref=GeneID:107788296] [protein=DNA mismatch repair protein MSH4-like isoform X4] [protein_id=XP_016465458.1] [location=complement(join(898..1212,1292..1431,1508..1647,1989..2074,2150..2295,2384..2456,2986..3061,3579..3686,3892..3938,4794..4839,5607..5719,5806..5841,5939..6031))] [gbkey=CDS]
Sequence

ATGGCGATCATTGTTCCTCCAAATAAACTGGCAGCAGATGGAATGGTCGGAGTCTCACAG
CTAGCTGATGGATTTTGTTCCTCCACAAGAAAGGTTATAATGAATCGTGGTTGCTTTGAT
GATACCAGGGGAGCTGTACTGGTTAAAGGATTAGCTGCTAAGGAACCGTCTGCTCTTGGT
TTGGACTCATACTACAAGCAATATTATTTGTGTCTGGCTGCAGCAGCGGCAACTATCAAG
TGGATTGAAGCAGAGAAAGGTGTTATTGTGGTAAATCACTCTTTGCTGGTTACCTTCAAT
GGATCTTTTGACCACATGAACATTGATGCCACCAGTGTTCAGAACTTGGAGATAATTGAG
CCTATGCACTCTTCTCTTTTGGGCACAAACAGCAAAAAGAGAAGTTTATTCCACATGCTT
AAAACAACTCGAACTATTGGCGGGACTAGACTTCTGAGGGCAAATCTTTTGCAGCCTCTG
AAAGACATAGAGACCATTAACACTCGACTCAATTGCCTGGATGAGTTGATGAGCAATGAG
CAGCTATTCTTTGGCTTGTCTCAGGCCCTTCGTAAGTTTCCGAAAGAAACAGATAGGGTC
CTTTGTCACTTCTGCTTCAAGCCAAAGAGAGTTACTAATGAAGTCTTGGCTTCAGATAAT
GGAAGGAGGAACCAAATTATGATATCCAGCATTATTCTTCTCAAAACCGCTCTTGATGCT
TTACCGTTACTCTCCCAGGTGCTTAAAGAAGCCAAGAGTTGTCTGCTGGGAAATGTTTAC
AAGTCCATATGTGAGAATGAAAAATATACTTCAATCAGGAACAGAATTGGAGAAGTGATT
GATGAAGATGTCCTTCATACACGAGTTCCTTTTGTTGCACGGACACAGCAGTGTTTTGCT
CTTAAGGCTGGAGTTGATGGGCTTCTTGATATGGCCCGTAGATCATTTTGTGACACCAGC
GAAGCTATATACGACCTAGCAAATAAGTATCGTGAAGATTTCAGACTGCCAAACTTGAAG
ATCCCATTCAATAACAGGAAAGGGTTTTACTTTAGCATTCCGCAAAAGGACATACAGGGA
AAACTACCCAGCAAGTTCATCCAGGTCATGAAACATGGAAACAATGTCCATTGCTCCAGT
CTTGAACTTGCTTCAGTGAGTATTACCTGGCATCCATTGCTACATTCCTCTGTAGGCTCC
ATTTGGTTTGGTGCAAAACATATTCCAGAAGATATTGCTCTTGCAAATTTTCATGAGGAA
AACCCGGCAAATCAACTTGAAGCAATAACTCTTAAGGGCGGGAGTGAATGCACCATTGGG
GATGGGGCACGAAGGCTAAAAGAAAAAGTAGTGGATCAGCGTAAAATGTTTTCAATATGC
AATAATGTGAAAGGGAAGTGTGGGAATACTGTTTGGTGA

Peptide Sequence

PEP ID

XP_016465458.1
PEP Infomation

PREDICTED: DNA mismatch repair protein MSH4-like isoform X4 [Nicotiana tabacum]
Sequence

MAIIVPPNKLAADGMVGVSQLADGFCSSTRKVIMNRGCFDDTRGAVLVKGLAAKEPSALG
LDSYYKQYYLCLAAAAATIKWIEAEKGVIVVNHSLLVTFNGSFDHMNIDATSVQNLEIIE
PMHSSLLGTNSKKRSLFHMLKTTRTIGGTRLLRANLLQPLKDIETINTRLNCLDELMSNE
QLFFGLSQALRKFPKETDRVLCHFCFKPKRVTNEVLASDNGRRNQIMISSIILLKTALDA
LPLLSQVLKEAKSCLLGNVYKSICENEKYTSIRNRIGEVIDEDVLHTRVPFVARTQQCFA
LKAGVDGLLDMARRSFCDTSEAIYDLANKYREDFRLPNLKIPFNNRKGFYFSIPQKDIQG
KLPSKFIQVMKHGNNVHCSSLELASVSITWHPLLHSSVGSIWFGAKHIPEDIALANFHEE
NPANQLEAITLKGGSECTIGDGARRLKEKVVDQRKMFSICNNVKGKCGNTVW

Transcript Sequence

Gene sequence data has not been registered.